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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61491550_61491619_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61491550 - 61491619
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCACCCTCATCT
Flanking Amino Acid:
IIFWGHSLGTGIATNAARKL
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
67.1
44.6
Major BPS
77.7
0.69
1
81
30.2
Major PPT
88.5
0.87
0.6
85
22.7
Minor 5ss
34.5
-1.8
3.5
39.9
46.1
Minor BPS
52.5
0.16
1.9
70.91
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002445
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002463
61489879 - 61493886
4008