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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61492013_61492946_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61492013 - 61492946
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CGTTCCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CGATTTTTATCC
Flanking Amino Acid:
IIYLHGNGGTRAASHRVQFM
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.9
88.3
21.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.9
0.45
0.9
67.4
33.8
Minor 5ss
21.2
-3.3
3.3
28.3
35.9
Minor BPS
52.7
0.06
1.6
58.99
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002445
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002463
61489879 - 61493886
4008