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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6150187_6152157_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6150187 - 6152157
Intron Length:
1971

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAGTGCTT
5'SS Class:
major
3'SS Sequence:
TATTTATCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTTTTTAACT
Flanking Amino Acid:
SGLEKKVRDIV
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.3
62.3
42.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.9
0.76
0.8
77.7
35.4
Minor 5ss
24.6
-2.9
4.4
38.2
46.8
Minor BPS
81.9
1.08
1
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026679
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042276
6144191 - 6152162
7972