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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61519808_61520548_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61519808 - 61520548
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCAAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATACAC
U12 Branch Point Sequence:
TTTTCCCCAAAT
Flanking Amino Acid:
TRGSEEYEAEGQLRFWNPDD
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
52.7
0.07
1
62.3
33.2
Major PPT
66.8
0.38
0.9
63.1
36.3
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
61.5
0.44
2
87
37.9

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046156
61506570 - 61547097
40528
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850