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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61521997_61522545_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61521997 - 61522545
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
CCTGCCACAGCT
Flanking Amino Acid:
RQLKRHLSMQSFDESGRRTA
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
82.1
0.72
0.7
76.4
25.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
43.4
-0.4
2.1
60.85
48.4

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046156
61506570 - 61547097
40528
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850