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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6152391_6154835_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6152391 - 6154835
Intron Length:
2445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCAAA
5'SS Class:
major
3'SS Sequence:
TTTTACATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTAATTTTACAT
Flanking Amino Acid:
PGSYRDDTPKSSPPRPVSVE
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
67.1
40
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.4
0.77
0.8
78.5
34.3
Minor 5ss
40.7
-1
2.9
49.4
46.6
Minor BPS
50.2
0.09
1.7
70.19
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006924
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007217
6147805 - 6154986
7182