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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61525919_61526707_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61525919 - 61526707
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGGG
5'SS Class:
major
3'SS Sequence:
CTGTCTGGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
AAATGCTGAAGC
Flanking Amino Acid:
IRDRLTLSLKENSRLESELL
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
60.8
44.4
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
71.1
0.47
1
68.8
42
Minor 5ss
35.4
-1.7
3.4
47.6
47.9
Minor BPS
46.1
-0.3
2.1
55.99
41.8

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850
ENSAPLT00000046156
61506570 - 61547097
40528