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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61527673_61528987_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
61527673 - 61528987
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCGA
5'SS Class:
major
3'SS Sequence:
CCCCTGCGGTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACTCAGCT
Flanking Amino Acid:
MKSKYELQCRELQDQIDELH
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
65
42.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
57.8
0.18
1.1
56.5
38.8
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
48.7
-0
2
71.18
45.1

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046156
61506570 - 61547097
40528
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850