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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61529142_61529446_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61529142 - 61529446
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CTGTTTTTAAAG
Flanking Amino Acid:
HGNSGIEPDQGLGSEDCNPL
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
73.2
0.52
1
73.6
34.9
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
58.9
0.14
1.5
59.4
43

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850
ENSAPLT00000046156
61506570 - 61547097
40528