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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61529569_61530677_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61529569 - 61530677
Intron Length:
1109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
ATAAAATGAACT
Flanking Amino Acid:
HHLKQELEDTVSHYEKQLDE
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.4
36.8
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
88.7
0.87
0.6
84.2
23.8
Minor 5ss
40.6
-1.1
3.1
56.2
48
Minor BPS
47.5
-0.1
1.9
68.24
41.2

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850
ENSAPLT00000046156
61506570 - 61547097
40528