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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61535349_61535951_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61535349 - 61535951
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GTGACCCTAATG
Flanking Amino Acid:
RELNGSREEMRQKIEAVRKE
Intron Amino Acid Position:
1543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
73.8
42.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.7
0.71
0.7
76.1
32.5
Minor 5ss
36.4
-1.5
3.3
49.5
46.5
Minor BPS
52
-0
1.8
57.84
43.6

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850
ENSAPLT00000046156
61506570 - 61547097
40528