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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61537262_61537631_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61537262 - 61537631
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGGAT
5'SS Class:
major
3'SS Sequence:
TTACTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTACTCTGAAGC
Flanking Amino Acid:
KEELENSKVESSNMVSSLEM
Intron Amino Acid Position:
1639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.5
39
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.2
0.72
0.9
76.7
37.2
Minor 5ss
29.2
-2.4
3.8
46
49.3
Minor BPS
52.6
0.06
1.8
65.44
39.7

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850
ENSAPLT00000046156
61506570 - 61547097
40528