Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61537746_61539139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61537746 - 61539139

Intron Length:

1394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGCAC

5'SS Class:

major

3'SS Sequence:

TTGTTTTCCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTGAC

U12 Branch Point Sequence:

AGGAACTTGACT

Flanking Amino Acid:

LKQELEKTKQLPRCADLSDL

Intron Amino Acid Position:

1677

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.1

57.5

41.7

Major BPS

65.1

0.38

39.5

Major PPT

84.4

0.77

0.8

80.2

Minor 5ss

29.3

-2.4

3.5

45.6

Minor BPS

55.2

0.25

1.6

68.31

Associated Gene:

Gene:

NIN

Ensembl Gene ID:

ENSAPLG00000002459

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036840

61506570 - 61554952

48383

ENSAPLT00000018978

61506570 - 61554952

48383

ENSAPLT00000002506

61506570 - 61550419

43850

ENSAPLT00000046156

61506570 - 61547097

40528