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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61539898_61540599_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61539898 - 61540599
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAG
5'SS Class:
major
3'SS Sequence:
CTGCCCCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
TGCCCCTTACAG
Flanking Amino Acid:
KTQLTVAQEKVQSLDETLQN
Intron Amino Acid Position:
1756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
66.7
38.5
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
75.9
0.58
0.8
68.5
31.9
Minor 5ss
38.3
-1.3
2.9
48
47.7
Minor BPS
49.4
-0.1
1.8
54.96
45.6

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850
ENSAPLT00000046156
61506570 - 61547097
40528