Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61542019_61542612_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61542019 - 61542612

Intron Length:

594

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCTGT

5'SS Class:

major

3'SS Sequence:

CTGGTCTCTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

ATTTGTTCATCT

Flanking Amino Acid:

TADLALAREKIRQLESTILS

Intron Amino Acid Position:

1858

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

71.6

40.9

Major BPS

84.8

0.86

85.7

34.9

Major PPT

72.8

0.51

0.9

70.1

36.5

Minor 5ss

45.6

-0.5

2.9

65.6

45.5

Minor BPS

48.6

-0

2.2

74.31

42.8

Associated Gene:

Gene:

NIN

Ensembl Gene ID:

ENSAPLG00000002459

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036840

61506570 - 61554952

48383

ENSAPLT00000018978

61506570 - 61554952

48383

ENSAPLT00000002506

61506570 - 61550419

43850

ENSAPLT00000046156

61506570 - 61547097

40528