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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61542763_61543312_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61542763 - 61543312
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTCTAAGGAAAC
Flanking Amino Acid:
QKELSSANRKISQMNSLEHE
Intron Amino Acid Position:
1908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1.1
83.4
29.3
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
76.5
0.6
0.8
72.7
32
Minor 5ss
41.1
-1
2.7
53.3
43.9
Minor BPS
39.2
-0.8
2.3
54.93
42.4

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036840
61506570 - 61554952
48383
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850
ENSAPLT00000046156
61506570 - 61547097
40528