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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61543412_61547065_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61543412 - 61547065
Intron Length:
3654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTTT
5'SS Class:
major
3'SS Sequence:
TTTTGCTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTGTGCTGATG
Flanking Amino Acid:
QVKLDDQLMEMLHSSSSVML
Intron Amino Acid Position:
1941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72.5
39.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
82.7
0.74
0.9
81
36.6
Minor 5ss
41.7
-0.9
3.6
64.7
46.6
Minor BPS
41.8
-0.7
2.3
53.97
41.9

Associated Gene:

Gene:
NIN
Ensembl Gene ID:
ENSAPLG00000002459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018978
61506570 - 61554952
48383
ENSAPLT00000002506
61506570 - 61550419
43850
ENSAPLT00000036840
61506570 - 61554952
48383