Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61547258_61550356_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61547258 - 61550356

Intron Length:

3099

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCCC

5'SS Class:

major

3'SS Sequence:

CTTCTTTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATCAG

U12 Branch Point Sequence:

AGTATCCCACTT

Flanking Amino Acid:

SRPSETNMQQALLPEQRAVH

Intron Amino Acid Position:

2005

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

63.8

40.7

Major BPS

55.5

0.14

1.5

65.8

Major PPT

83.8

0.76

0.7

77.2

31.6

Minor 5ss

31.4

-2.1

3.3

42.6

44.4

Minor BPS

40.6

-0.6

1.9

56.64

39.8

Associated Gene:

Gene:

NIN

Ensembl Gene ID:

ENSAPLG00000002459

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002506

61506570 - 61550419

43850