Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61558037_61560421_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61558037 - 61560421

Intron Length:

2385

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTGAGTTAT

5'SS Class:

major

3'SS Sequence:

TATTCTATAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TATTCTATAACA

Flanking Amino Acid:

SPFTVQAISIHLMPSFIRHG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

1.2

80.1

30.7

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

75.5

0.57

70.9

38.2

Minor 5ss

37.8

-1.4

48.3

41.3

Minor BPS

72.2

0.69

1.5

81.73

32.8

Associated Gene:

Gene:

SAV1

Ensembl Gene ID:

ENSAPLG00000003206

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003261

61557269 - 61577116

19848