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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61570096_61575678_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61570096 - 61575678
Intron Length:
5583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
TGTCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCCTACTCATCT
Flanking Amino Acid:
WLQVYARAPVKYDHILKWEL
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
68.6
39.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75.1
0.57
0.8
66.3
35.8
Minor 5ss
43.7
-0.7
3
55.8
43
Minor BPS
48.8
-0
2
69
47.4

Associated Gene:

Gene:
SAV1
Ensembl Gene ID:
ENSAPLG00000003206
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003261
61557269 - 61577116
19848
ENSAPLT00000039834
61559251 - 61577970
18720