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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61580261_61581329_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61580261 - 61581329
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTCCCAATG
Flanking Amino Acid:
DQVAAALWDQGSTNEALYKL
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.7
0.53
0.8
65.2
36.2
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
48.8
-0.2
1.9
59.67
42.7

Associated Gene:

Gene:
ATL1
Ensembl Gene ID:
ENSAPLG00000003351
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035489
61578005 - 61603936
25932
ENSAPLT00000033362
61578005 - 61602624
24620
ENSAPLT00000035632
61579745 - 61603936
24192