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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61581762_61582801_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61581762 - 61582801
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
GTGTTTTCCACG
Flanking Amino Acid:
KDTYSRRMEEVCGGDKPFLA
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
75.5
0.57
0.9
70.4
35.3
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
45.2
-0.5
2
51.32
43.6

Associated Gene:

Gene:
ATL1
Ensembl Gene ID:
ENSAPLG00000003351
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035489
61578005 - 61603936
25932
ENSAPLT00000033362
61578005 - 61602624
24620
ENSAPLT00000003451
61578005 - 61603936
25932
ENSAPLT00000035632
61579745 - 61603936
24192