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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61582874_61583599_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61582874 - 61583599
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
TGCAGCTAAACT
Flanking Amino Acid:
ELPHPKSMLQATAEANNLAA
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
74.4
0.55
1
68.8
37.1
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
48.9
-0
2.1
69.13
47.3

Associated Gene:

Gene:
ATL1
Ensembl Gene ID:
ENSAPLG00000003351
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003451
61578005 - 61603936
25932
ENSAPLT00000035632
61579745 - 61603936
24192
ENSAPLT00000035489
61578005 - 61603936
25932
ENSAPLT00000033362
61578005 - 61602624
24620