About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61583657_61584342_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61583657 - 61584342
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGCT
5'SS Class:
major
3'SS Sequence:
CCCTGTTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
ATCCGATTGATT
Flanking Amino Acid:
TCRGLVEYFKAYIKIYQGEE
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65
38.8
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
76.6
0.6
0.8
71.2
33.1
Minor 5ss
38
-1.4
3.6
56.7
47.6
Minor BPS
45.9
-0.2
2
63.77
40.8

Associated Gene:

Gene:
ATL1
Ensembl Gene ID:
ENSAPLG00000003351
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035632
61579745 - 61603936
24192
ENSAPLT00000035489
61578005 - 61603936
25932
ENSAPLT00000033362
61578005 - 61602624
24620
ENSAPLT00000003451
61578005 - 61603936
25932