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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61590925_61592318_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61590925 - 61592318
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
GGAGCTAAAAGT
Flanking Amino Acid:
VQEDDLQHLQLFTEYGRLAM
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.8
78.8
35.5
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
81.3
0.7
0.7
72.7
32.1
Minor 5ss
35.5
-1.6
2.8
45.4
42.6
Minor BPS
38.9
-0.7
2
50.81
43.1

Associated Gene:

Gene:
ATL1
Ensembl Gene ID:
ENSAPLG00000003351
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003451
61578005 - 61603936
25932
ENSAPLT00000035632
61579745 - 61603936
24192
ENSAPLT00000035489
61578005 - 61603936
25932
ENSAPLT00000033362
61578005 - 61602624
24620