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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61592370_61592838_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61592370 - 61592838
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTGGTCTGAAGT
Flanking Amino Acid:
ALSTMISSIQVYNLSQNVQE
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.8
81.9
28.9
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
48.3
-0
1.9
64.76
45.7

Associated Gene:

Gene:
ATL1
Ensembl Gene ID:
ENSAPLG00000003351
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003451
61578005 - 61603936
25932
ENSAPLT00000035632
61579745 - 61603936
24192
ENSAPLT00000035489
61578005 - 61603936
25932
ENSAPLT00000033362
61578005 - 61602624
24620