About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61592944_61593359_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61592944 - 61593359
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCT
5'SS Class:
major
3'SS Sequence:
TTCTGCCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TGTTTTCCAAGC
Flanking Amino Acid:
FLVDKPDGKKVAVLLMDTQG
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.4
35.4
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
74.3
0.55
1
73.3
37.2
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
44.8
-0.4
2
59.42
39.8

Associated Gene:

Gene:
ATL1
Ensembl Gene ID:
ENSAPLG00000003351
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033362
61578005 - 61602624
24620
ENSAPLT00000003451
61578005 - 61603936
25932
ENSAPLT00000035632
61579745 - 61603936
24192
ENSAPLT00000035489
61578005 - 61603936
25932