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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6159741_6159911_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6159741 - 6159911
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CCTATCTAAATG
Flanking Amino Acid:
QTGQDPSKITGYTFCEKLDE
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
82
0.72
0.8
74.3
36.5
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
48.3
-0.2
1.8
50.63
44.5

Associated Gene:

Gene:
DEPDC7
Ensembl Gene ID:
ENSAPLG00000006814
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007090
6159412 - 6168018
8607