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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6160211_6160395_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6160211 - 6160395
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATG
5'SS Class:
strong_major
3'SS Sequence:
TATTATTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATATTA
Flanking Amino Acid:
HNSELKLQEESDNRMVVKRT
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
75.1
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.5
0.78
0.8
81.8
35.2
Minor 5ss
42.3
-0.8
3
56.9
47.4
Minor BPS
53.3
0.1
1.8
69.06
37.4

Associated Gene:

Gene:
DEPDC7
Ensembl Gene ID:
ENSAPLG00000006814
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007090
6159412 - 6168018
8607