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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6160539_6161912_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6160539 - 6161912
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GTAGCTTTATTT
Flanking Amino Acid:
EIHPGIAELLVNGKMEQSLE
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
84.4
0.77
0.8
77.5
36.5
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
54
0.2
1.7
69.05
42.4

Associated Gene:

Gene:
DEPDC7
Ensembl Gene ID:
ENSAPLG00000006814
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007090
6159412 - 6168018
8607