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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61616510_61637479_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61616510 - 61637479
Intron Length:
20970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
TGTGTCTTAACT
Flanking Amino Acid:
GSGTYGDVYKARNLHTGELA
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
85.9
0.81
0.8
81
29.3
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
77.7
0.95
1.3
88.23
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029510
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037304
61615854 - 61637608
21755