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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6162128_6162931_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6162128 - 6162931
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CAAAATTAAACT
Flanking Amino Acid:
REILKAFSDSQTDEWLSAAI
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
81.3
0.7
0.8
73.6
37
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
46.2
-0.2
1.8
59.59
43.4

Associated Gene:

Gene:
DEPDC7
Ensembl Gene ID:
ENSAPLG00000006814
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007090
6159412 - 6168018
8607