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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61652597_61654262_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61652597 - 61654262
Intron Length:
1666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATTTCTAAATA
Flanking Amino Acid:
LLTDHGDVKLADFGVAAKIT
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.5
0.87
0.7
80.8
36.5
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
62.7
0.39
1.6
70.3
36.1

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047004
61651692 - 61677851
26160
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395