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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61654336_61655306_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61654336 - 61655306
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATAAAC
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
TTGCTTTTAAAG
Flanking Amino Acid:
KRKSFIGTPYWMAPEVAAVE
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
69.7
34.4
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
77.6
0.62
1
78.4
33.9
Minor 5ss
34
-1.8
2.9
40.9
39.5
Minor BPS
58.3
0.12
1.5
61.4
40.7

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047004
61651692 - 61677851
26160
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395