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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61655439_61656019_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
61655439 - 61656019
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGCTGG
5'SS Class:
weak_major
3'SS Sequence:
CCTTTACCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCCTTTACC
Flanking Amino Acid:
QPPMFDLHPMRALFLMSKSN
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.3
53.2
46.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77
0.61
0.8
74.5
29.5
Minor 5ss
44.8
-0.6
2.6
56.4
47.8
Minor BPS
77.1
0.83
1.5
82.88
37.2

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047004
61651692 - 61677851
26160
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395