About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61658299_61658637_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61658299 - 61658637
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ACAACTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ACTTCCTAATAT
Flanking Amino Acid:
YNEVDDDDFEPHSVIRHTIR
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
70
0.45
1
62.2
38.8
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
50.2
0.08
2
71.39
45.3

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395
ENSAPLT00000047004
61651692 - 61677851
26160