Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61661044_61663566_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61661044 - 61663566

Intron Length:

2523

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

ACATTTCACCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

ATGTTCTAAACA

Flanking Amino Acid:

WNPFVEGGSSRGLLTKFGDG

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.1

1.11

0.7

89.8

22.5

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

0.29

0.9

55.5

39.6

Minor 5ss

-1.6

2.6

43.5

43.6

Minor BPS

0.47

1.7

72.97

39.3

Associated Gene:

Gene:

MAP4K5

Ensembl Gene ID:

ENSAPLG00000003947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047004

61651692 - 61677851

26160

ENSAPLT00000035277

61651692 - 61680086

28395