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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61665888_61666002_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61665888 - 61666002
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCTCTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGATCT
Flanking Amino Acid:
PRKKEKRDFPKPAINGLPPT
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.3
0.71
0.7
76.1
26.1
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
50.3
0.09
1.9
76.39
39.8

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395
ENSAPLT00000047004
61651692 - 61677851
26160