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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61666934_61670765_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61666934 - 61670765
Intron Length:
3832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCTTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
CTTCTAGTAATG
Flanking Amino Acid:
NELHEATMEQLFPRKCTWLY
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
76.8
34.7
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
93.4
0.98
0.5
92.6
17.4
Minor 5ss
44.4
-0.6
3.1
64.6
46.7
Minor BPS
44
-0.5
2.2
53.06
42.3

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004112
61651692 - 61680086
28395
ENSAPLT00000047004
61651692 - 61677851
26160
ENSAPLT00000035277
61651692 - 61680086
28395