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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61670827_61671584_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
61670827 - 61671584
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-TA
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCTCTTA|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TGTGCCATATCA
Flanking Amino Acid:
VINNTLMSLSAGKTFQLYSH
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
70.2
0.5
1
72.1
33
Major PPT
25.6
-1.4
4.2
54.7
41.4
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
51.7
0.05
2
69.19
42.8

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047004
61651692 - 61677851
26160
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395