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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61671703_61671821_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61671703 - 61671821
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAATC
5'SS Class:
major
3'SS Sequence:
CCTGTTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTTTTATACCT
Flanking Amino Acid:
THRFPDKILPRKFALTTKIP
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
72.5
37.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.4
0.64
0.9
69.4
40.5
Minor 5ss
36.3
-1.6
3.3
51.9
44.8
Minor BPS
49.4
0.04
1.9
70.16
41.3

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047004
61651692 - 61677851
26160
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395