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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61671881_61673169_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61671881 - 61673169
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTATATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACATTTTTAATT
Flanking Amino Acid:
DTKGCHKCCIVRNPYTGHKY
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.6
0.69
0.9
77.4
35.8
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
68.3
0.65
1.1
74.15
37.4

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395
ENSAPLT00000047004
61651692 - 61677851
26160