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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61673274_61673712_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61673274 - 61673712
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
EPMQKFMLIKHFDFPLPSPL
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
86.7
0.82
0.6
85.4
21.9
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047004
61651692 - 61677851
26160
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395