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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61673891_61674850_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61673891 - 61674850
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCTTTTTCACT
Flanking Amino Acid:
ASSWFTEIGAGNQQLDAIHV
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
72.5
37.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
79.1
0.65
0.8
74.7
34.9
Minor 5ss
33.2
-1.9
3.1
43.3
43.8
Minor BPS
65.3
0.56
1.7
82.56
39.6

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047004
61651692 - 61677851
26160
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395