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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61674920_61675608_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61674920 - 61675608
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TGCTTTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGGGTTTTAATA
Flanking Amino Acid:
ERDTVLVCLDKFVKIVNLQG
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81
0.7
0.8
76.5
32.3
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
59
0.28
1.4
62.68
38.6

Associated Gene:

Gene:
MAP4K5
Ensembl Gene ID:
ENSAPLG00000003947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035277
61651692 - 61680086
28395
ENSAPLT00000004112
61651692 - 61680086
28395
ENSAPLT00000047004
61651692 - 61677851
26160