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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61687387_61687749_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61687387 - 61687749
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CACTGTGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
AGTCCTTCCACT
Flanking Amino Acid:
MQLKHPNLVNL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
71.5
0.48
1
63.8
41.5
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
48.5
-0
2
69.05
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030510
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044500
61687384 - 61693129
5746