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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61687872_61689911_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61687872 - 61689911
Intron Length:
2040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTACAACA
Flanking Amino Acid:
VLHELDKHPWGVPEHLVKSI
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82
0.72
0.9
78.9
33.1
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
58.1
0.25
1.8
76.1
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030510
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044500
61687384 - 61693129
5746