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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61689456_61689911_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61689456 - 61689911
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGAGAC
5'SS Class:
major
3'SS Sequence:
TTTTTTACAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTACAACA
Flanking Amino Acid:
RYQVYAAGTEWVPEHLVKSI
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
62.4
36.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82
0.72
0.9
78.9
33.1
Minor 5ss
29.8
-2.3
3.5
37.7
42.5
Minor BPS
58.1
0.25
1.8
76.1
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030510
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034715
61688914 - 61693129
4216