Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61689985_61691543_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61689985 - 61691543

Intron Length:

1559

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTCCC

5'SS Class:

major

3'SS Sequence:

TGTTTGTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTGTAT

U12 Branch Point Sequence:

TTGGGTGTATTT

Flanking Amino Acid:

QALNFCHKHNCIHRDVKPEN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.3

69.7

41.3

Major BPS

45.5

-0.2

1.6

43.1

49.2

Major PPT

85.2

0.79

0.9

76.9

42.1

Minor 5ss

36.9

-1.5

2.9

45.4

35.3

Minor BPS

38.9

-0.7

2.4

58.25

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044500

61687384 - 61693129

5746

ENSAPLT00000034715

61688914 - 61693129

4216