About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61734657_61735225_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61734657 - 61735225
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAATT
Flanking Amino Acid:
MHPEMEVLGYKVDYH
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.7
0.76
0.8
77.6
35.3
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
64.6
0.54
1.5
79.17
37.8

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031553
61734432 - 61771636
37205